A collection of 13075 Pathway/Genome Databases (PGDBs), plus software tools for understanding their data. These tools for are used for navigating, visualizing, and analyzing the underlying databases, and for analyzing omics data. The BioCyc website provides a suite of software tools for database searching and visualization, for omics data analysis, and for comparative genomics and comparative pathway questions.
Genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. Ensembl annotates genes, computes multiple alignments, predicts regulatory function and collects disease data. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species.
Molecular biology software that allows researchers and labs to document DNA constructs in an a shareable, electronic format. It also allows for the creation of seamless gene fusions, offers a unique restriction cloning interface, and automatically records the steps in a cloning process. The SnapGene format matches GenBank standards but adds options such as color, directionality, and segments.